RoSBNet - User contributions [en]

References

2011-01-13T10:43:21Z

August: /* General Principles of Synthetic Biology */

<center>
Please share references by adding links into this page
</center>

[[Image:route.png|thumb|ACS Chem. Biol., 2008, 3 (1), pp 38–50|right|300px]]
== General Principles of Synthetic Biology ==
[http://www.nature.com/nature/journal/v438/n7067/abs/nature04335.html Reconstruction of genetic circuits]

[http://www.ncbi.nlm.nih.gov/pubmed/16711359 Engineering life: building a fab for biology]

[http://www.bioinfo.de/isb/2006/06/0038/ Engineering life through Synthetic Biology]

[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRV-4KPX8RY-1&_user=126524&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000010360&_version=1&_urlVersion=0&_userid=126524&md5=32f32f9adee8425380015b935a6eadf8 Systems biology as a foundation for genome-scale synthetic biology]

[http://www.nature.com/nature/journal/v469/n7329/full/469171a.html Synthetic biology: Division of logic labour] Cellular compartmentalization is an effective way to build gene circuits capable of complex logic operations, in which binary inputs are converted into binary outputs according to user-defined rules.

== Parts Standardization/Construction ==
[http://openwetware.org/images/9/99/Nbt1413.pdf Refinement and standardization of synthetic biological parts and devices]

[http://www.jbioleng.org/content/2/1/5 Engineering BioBrick vectors from BioBrick parts]

== Mathematical/Computational Methods ==
[http://www.weizmann.ac.il/mcb/UriAlon/Papers/Shinar_Alon_Feinberg_SIAM_2009.pdf Sensitivity and robustness in chemical reaction networks]

== New Designs/Design Principles ==
[http://www.nature.com/nature/journal/v403/n6767/full/403335a0.html A synthetic oscillatory network of transcriptional regulators]

[http://www.nature.com/msb/journal/v4/n1/full/msb200843.html The incoherent feed-forward loop can generate non-monotonic input functions for genes]

== In-vivo/vitro Chassis ==
[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WN5-4GS4TTH-C&_user=126524&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000010360&_version=1&_urlVersion=0&_userid=126524&md5=05e4ed6bd00339746d790a93c7a96ef2 Protein synthesis by pure translation systems]

[http://www.pnas.org/content/100/22/12672 Principles of cell-free genetic circuit assembly]

== Applications ==
[http://www.nature.com/msb/journal/v4/n1/full/msb200824.html A synthetic Escherichia coli predator–prey ecosystem]

[http://www.nature.com/nature/journal/v434/n7037/full/nature03461.html A synthetic multicellular system for programmed pattern formation]

== Software Packages/Tools ==
[http://www.mathworks.co.uk/access/helpdesk/help/toolbox/simbio/index.html?/access/helpdesk/help/toolbox/simbio/ MATLAB SimBiology]

== Measurement Methods ==
[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B7CV2-4P3DWNX-S&_user=126524&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000010360&_version=1&_urlVersion=0&_userid=126524&md5=179a5617e3cd099a11a4ec40f9b85780 Single-cell analysis of gene expression by fluorescence microscopy]

== Ethical, Legal, and Social Issues (ELSI) ==

[http://www.nature.com/nature/journal/v468/n7326/pdf/468889a.pdf Build life to understand it] Biologists and engineers should work together: synthetic biology reveals how organisms develop and function, argue Michael Elowitz and Wendell A. Lim.

[http://www.synbiosafe.eu/uploads///pdf/Diffusion_of_synthetic_biology.pdf Diffusion of synthetic biology: a challenge to biosafety. Systems and Synthic Biology]

[http://www.sciencemag.org/cgi/content/summary/286/5447/2087 Ethical Considerations in Synthesizing a Minimal Genome]

References

2010-12-16T08:39:26Z

August:

<center>
Please share references by adding links into this page
</center>

[[Image:route.png|thumb|ACS Chem. Biol., 2008, 3 (1), pp 38–50|right|300px]]
== General Principles of Synthetic Biology ==
[http://www.nature.com/nature/journal/v438/n7067/abs/nature04335.html Reconstruction of genetic circuits]

[http://www.ncbi.nlm.nih.gov/pubmed/16711359 Engineering life: building a fab for biology]

[http://www.bioinfo.de/isb/2006/06/0038/ Engineering life through Synthetic Biology]

[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRV-4KPX8RY-1&_user=126524&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000010360&_version=1&_urlVersion=0&_userid=126524&md5=32f32f9adee8425380015b935a6eadf8 Systems biology as a foundation for genome-scale synthetic biology]

== Parts Standardization/Construction ==
[http://openwetware.org/images/9/99/Nbt1413.pdf Refinement and standardization of synthetic biological parts and devices]

[http://www.jbioleng.org/content/2/1/5 Engineering BioBrick vectors from BioBrick parts]

== Mathematical/Computational Methods ==
[http://www.weizmann.ac.il/mcb/UriAlon/Papers/Shinar_Alon_Feinberg_SIAM_2009.pdf Sensitivity and robustness in chemical reaction networks]

== New Designs/Design Principles ==
[http://www.nature.com/nature/journal/v403/n6767/full/403335a0.html A synthetic oscillatory network of transcriptional regulators]

[http://www.nature.com/msb/journal/v4/n1/full/msb200843.html The incoherent feed-forward loop can generate non-monotonic input functions for genes]

== In-vivo/vitro Chassis ==
[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WN5-4GS4TTH-C&_user=126524&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000010360&_version=1&_urlVersion=0&_userid=126524&md5=05e4ed6bd00339746d790a93c7a96ef2 Protein synthesis by pure translation systems]

[http://www.pnas.org/content/100/22/12672 Principles of cell-free genetic circuit assembly]

== Applications ==
[http://www.nature.com/msb/journal/v4/n1/full/msb200824.html A synthetic Escherichia coli predator–prey ecosystem]

[http://www.nature.com/nature/journal/v434/n7037/full/nature03461.html A synthetic multicellular system for programmed pattern formation]

== Software Packages/Tools ==
[http://www.mathworks.co.uk/access/helpdesk/help/toolbox/simbio/index.html?/access/helpdesk/help/toolbox/simbio/ MATLAB SimBiology]

== Measurement Methods ==
[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B7CV2-4P3DWNX-S&_user=126524&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000010360&_version=1&_urlVersion=0&_userid=126524&md5=179a5617e3cd099a11a4ec40f9b85780 Single-cell analysis of gene expression by fluorescence microscopy]

== Ethical, Legal, and Social Issues (ELSI) ==

[http://www.nature.com/nature/journal/v468/n7326/pdf/468889a.pdf Build life to understand it] Biologists and engineers should work together: synthetic biology reveals how organisms develop and function, argue Michael Elowitz and Wendell A. Lim.

[http://www.synbiosafe.eu/uploads///pdf/Diffusion_of_synthetic_biology.pdf Diffusion of synthetic biology: a challenge to biosafety. Systems and Synthic Biology]

[http://www.sciencemag.org/cgi/content/summary/286/5447/2087 Ethical Considerations in Synthesizing a Minimal Genome]

Member List

2010-11-10T09:07:21Z

August:

= RoSBNet Members =

Below you will find a list of RoSBNet members, with links to their websites for more information.

== Engineering/Mathematics Researchers ==

* [http://sysos.eng.ox.ac.uk/control/sysos/index.php/User:Antonis Antonis Papachristodoulou] 
* [http://www.ist.uni-stuttgart.de/allgower/allgower.shtml Frank Allgower] 
* [http://www3.imperial.ac.uk/people/m.barahona Mauricio Barahona] 
* [http://www.eee.strath.ac.uk/~hongyue/ Hong Yue] 
* [http://www.eee.manchester.ac.uk/aboutus/staff/show.html?ea=William.Heath William Heath] 
* [http://biology.st-andrews.ac.uk/vannesmithlab/ Anne Smith] 
* [http://www.rdg.ac.uk/icmr/about/staff/icmr-m-tindall.asp Marcus Tindall] 
* [http://www.montefiore.ulg.ac.be/~bullinger/ Eric Bullinger] 
* [http://www.gla.ac.uk/departments/aerospace/staff/academicstaff/jongraekim Jongrae Kim] 
* [http://control.ee.ethz.ch/index.cgi?page=people Elias August] 
* [http://www.sbs.ox.ac.uk/faculty/Reed-Tsochas+Felix/ Felix Reed-Tsochas] 
* [http://www.stats.ox.ac.uk/people/academic_staff/jotun_hein Jotun Hein] 
* [http://www.eng.ox.ac.uk/control/peopleJA.shtml James Anderson] 
* [http://www.eng.ox.ac.uk/samp/people.html Patrick McSharry] 
* [http://www.ist.uni-stuttgart.de/~waldherr/ Steffen Waldherr] 
* [http://www3.imperial.ac.uk/people/r.tanaka Reiko Tanaka] 
* [http://www.comlab.ox.ac.uk/people/Jonathan.Whiteley/ Jonathan Whiteley] 
* [http://www.physics.ox.ac.uk/users/kapanidis/ Achillefs Kapanidis] 
* [http://www.staff.ncl.ac.uk/d.j.wilkinson/ Darren Wilkinson] 
* [http://www.comlab.ox.ac.uk/people/David.Gavaghan/ David Gavaghan] 
* [http://www.le.ac.uk/eg/dgb3/ Declan Bates] 
* [http://www-control.eng.cam.ac.uk/~jmg77/ Jorge Goncalves] 
* [http://www.eecs.umich.edu/~ddv/ Domitilla del Vecchio] 
* [http://biochemistry.ucsf.edu/labs/elsamad/people/Hana_El_Samad/hana_el_samad.html Hana El-Samad] 
* [http://www.bionanotechnology.ox.ac.uk/index.php?option=com_content&task=view&id=24&Itemid=50 John Ryan] 
* [http://www.me.ucsb.edu/dept_site/people/khammash_page.htm Mustafa Khammash ] 
* [http://people.maths.ox.ac.uk/~maini/ Philip Maini] 
* [http://www.physics.ox.ac.uk/cm/cmt/jones/ Nick Jones] 
* [http://www.eng.ox.ac.uk/control/peopleSD.shtml Steve Duncan] 
* [http://www-control.eng.cam.ac.uk/Homepage/officialweb.php?id=232 Guy-Bart Stan] 
* [http://melykuti.web.elte.hu/index.htm Bence Melykuti] 
* [http://www-control.eng.cam.ac.uk/~aoh21/ Abdullah Hamadeh] 
* [http://www.eng.ox.ac.uk/~stcman/people.shtml Edward Hancock] 
* [http://www.st-hildas.ox.ac.uk/index.php/fellowsandlecturers/alubansky.html Alex Lubansky] 
* [http://www3.imperial.ac.uk/people/natalja.strelkowa06 Natalja Strelkowa] 
* [http://www.soton.ac.uk/ses/people/staff/ChipperfieldAJ.html Andrew Chipperfield] 
* [http://www.secam.ex.ac.uk/academic.dhtml?group=academic%20staff|teaching%20fellows&sid=1001 Orkun Soyer] 
* [http://www.enm.bris.ac.uk/anm/staff/enmdb/home.html Mario Di Bernardo] 
* [http://users.ox.ac.uk/~dpag0022/index.htm Eric Werner] 
* [http://mpf.biol.vt.edu/lab_website/people/Tongli_Zhang/ Tongli Zhang] 
* [http://www.ieeecss.org/main/mab-programs/distinguished-lecturers-program Rodolphe Sepulchre] 

== Biology/Biochemistry Researchers ==
* [http://www.bioch.ox.ac.uk/aspsite/index.asp?pageid=565 Judy Armitage] 
* [http://www.abdn.ac.uk/ims/staff/details.php?id=i.stansfield Ian Stansfield] 
* [http://www.brookes.ac.uk/res/experts/profiles/david_fell David Fell] 
* [http://www.plantsci.cam.ac.uk/research/alexwebb.html Alex Webb] 
* [http://swainlab.bio.ed.ac.uk/details.php Peter Swain] 
* [http://www.eng.ox.ac.uk/~cheit/ Ian Thompson] 
* [http://dps.plants.ox.ac.uk/plants/Staff/LeeSweetlove.aspx Lee Sweetlove] 
* [http://www.lincoln.ox.ac.uk/content/view/832/40/ Mark Roberts] 
* [http://www.pmb.ox.ac.uk/Fellows_Staff/Fellow_and_Staff_Profiles.php?profile=146 Steve Porter] 
* [http://sysos.eng.ox.ac.uk/control/RoSBNet/index.php/User:MarkChang Yo-Cheng (Mark) Chang] 
* [http://waterfall.union.edu/Staff_Directory/Union/Electrical__Computer_Engineering/Hooshangi_Sara_.php Sara Hooshangi] 
* [http://www.bioch.ox.ac.uk/aspsite/index.asp?pageid=593 Bela Novak] 
* [http://www.sysbio.ox.ac.uk/People/GW.html George Wadhams] 
* [http://sbcb.bioch.ox.ac.uk/sansom.php Mark Sansom] 
* [http://www.sheffield.ac.uk/civil/staff/academic/wh.html Wei Huang] 
* [http://www2.le.ac.uk/departments/engineering/ William Bryant] 
* [http://www.shef.ac.uk/materials/staff/claeyssens.html Frederik Claeyssens] 
* [http://www.cs.ncl.ac.uk/people/j.s.hallinan Jennifer Hallinan] 
* [http://www3.imperial.ac.uk/people/k.polizzi Karen Polizzi] 
* [http://www2.warwick.ac.uk/fac/sci/whri/about/staff/kdenby/ Katherine Denby] 
* [http://www.ceas.manchester.ac.uk/aboutus/staff/show.html?ea=hans.westerhoff Hans Westerhoff] 
* [http://www.eda.kent.ac.uk/school/staff_detail.aspx?id=330 Najl Valeyev] 
* [http://www.dpag.ox.ac.uk/research/cardiac_science/peter_robbins/robbins_members Nayia Petousi] 
* [http://www.mib.manchester.ac.uk/postgraduate/DTC/ Victoria Jackson] 

== Researchers from the Ethical, Legal and Social Sciences ==
* [http://web.comlab.ox.ac.uk/Annamaria.Carusi/ Annamaria Carusi] 
* [http://www.sbs.ox.ac.uk/insis/people/sugden+chris.htm Chris Sugden] 
* [http://www.ethox.org.uk/people/michael-parker Michael Parker] 
* [http://people.bath.ac.uk/ak280/ Alexander Kelle] 
* [http://www.ifom-ieo-campus.it/research/boniolocv.php Giovanni Boniolo] 
* [http://www.practicalethics.ox.ac.uk/nstaff.htm Julian Savulescu] 
* [http://www.philosophy.ox.ac.uk/members/marianne_talbot Marianne Talbot] 
* [http://www.bep.ox.ac.uk/our%20people.html Mark Sheehan] 
* [http://www.neuroethics.ox.ac.uk/node/19 Steve Clarke] 
* [http://www.ethox.org.uk/people/jane-kaye Jane Kaye] 
* [http://www.practicalethics.ox.ac.uk/nstaff.htm#staff Thomas Douglas] 
* [http://helex.medsci.ox.ac.uk/staff/researchers/liam-curren Liam Curren]